with a "rebuilt" ecu you have changed the mapping for air and fuel. do you know the specifics of what the ecu chip was burned for? have you done any other modifications to the car to accomodate the changed mapping?
in the meantime I would pull the plugs to see what is going on.
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if you can only race me in a straight line then whats the point 
...91 SMF SCCA
http://www.flickr.com/photos/8341770@N07/5601083432/http://www.flickr.com/photos/8341770@N07/5601083432/ by http://www.flickr.com/people/8341770@N07/, on Flickr
I see people out there spending money on the car to improve it … If you spend half that effort just working on your driving skills, making you and the car work together as a team, then you’ll go faster – period. To make the car go a second faster on the track takes a lot more energy and money than making yourself drive it one second faster.
– the late Tom Thrash SCCA Solo E Production