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The EFI module is hidden in the cowl.

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The GT500’s original Toploader four-speed manual transmission was swapped out for a modern Tremec TKO five-speed that adapts to the 428 CJ with a Modern Driveline Components conversion system. The smoother shifts and welcomed overdrive greatly improve the Shelby’s road manners.
The Tremec TKO five-speed

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Wilwood four-wheel disc brakes enhance the Shelby’s stopping capability compared to the old-school, factory-style front disc and rear drum brakes.

Externally, the Shelby’s lowered stance and larger wheels are the only indication that something is different about this otherwise concours-appearing 1969 GT500 SportsRoof. The Ride Tech Coil Over System not only improves handling to make the car more enjoyable to drive, but it also offers adjustable ride height and gives the Shelby an aggressive stance. Rack-and-pinion from Gate Way Performance Suspension tightens up the slack in the steering wheel.
The lowered stance is courtesy of the Ridetech suspension components.