I noticed I got more consistent settings when I moved the pressure tap for the MBC to a different spot, although I cannot remember if I moved it from the compressor discharge or TO the compressor discharge, something about the intake manifold pressure (more accurate) as oposed to right at the compressor before the pressure drop of the intercooler, this might be a starting point for you, I know it plagued me with my DSM
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10' 1198S
09' Ninja 500R
09' Stella