Well nobodys gonna give you a step by step Rich.
Drain the trans before you remove it otherwise you will have a huge mess.
After you remove the clips and nuts use a hammer to loosen the ball joints. Just hit it really hard a few times it should pop up. Then you can remove the axles easier.
Use 10w-30 or Honda Manual Transmission Fluid for the trans. DO NOT USE GEAR OIL.
You can use a broom stick instead of a clutch alignment tool to line up the clutch disc. You can also use an input shaft if you have one laying around.
Those are about the only tips I can remember. Its a pretty easy job.
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